
This directory contains the sources of the 'mummer' (maxmat3.x) program:

maxmatdef.h: some basic definitions
findmumcand.c: computing MUM-candidate by traversing a suffix tree
findmaxmat.c: computing maximal matches by traversing a suffix tree
maxmaxinp.c: reading the input sequences
maxmat3.c: the main program
maxmatopt.c: parsing options
procmaxmat.c: processing and output of MUM-candidates

*.mf: some files to be included into Makefile
