# Makefile.in generated by automake 1.12.2 from Makefile.am.
# doc/programs/html/Makefile.  Generated from Makefile.in by configure.

# Copyright (C) 1994-2012 Free Software Foundation, Inc.

# This Makefile.in is free software; the Free Software Foundation
# gives unlimited permission to copy and/or distribute it,
# with or without modifications, as long as this notice is preserved.

# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
# PARTICULAR PURPOSE.




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eimages_DATA = \
emboss_icon.jpg \
abiview.1.abiview.gif \
banana.1.banana.gif \
chaos.1.chaos.gif \
cirdna.1.cirdna.gif \
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syco.1.syco.gif \
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egroups_DATA = \
groups.html \
acd_group.html \
alignment_group.html \
alignment_consensus_group.html \
alignment_differences_group.html \
alignment_dot_plots_group.html \
alignment_global_group.html \
alignment_local_group.html \
alignment_multiple_group.html \
assembly_fragment_assembly_group.html \
data_resources_group.html \
data_retrieval_group.html \
data_retrieval_chemistry_data_group.html \
data_retrieval_feature_data_group.html \
data_retrieval_ontology_data_group.html \
data_retrieval_resource_data_group.html \
data_retrieval_sequence_data_group.html \
data_retrieval_sequence_data_assembly_data_group.html \
data_retrieval_text_data_group.html \
data_retrieval_tool_data_group.html \
data_retrieval_url_data_group.html \
display_group.html \
documentation_group.html \
edit_group.html \
enzyme_kinetics_group.html \
feature_tables_group.html \
hmm_group.html \
information_group.html \
menus_group.html \
nucleic_2d_structure_group.html \
nucleic_codon_usage_group.html \
nucleic_composition_group.html \
nucleic_cpg_islands_group.html \
nucleic_functional_sites_group.html \
nucleic_gene_finding_group.html \
nucleic_motifs_group.html \
nucleic_mutation_group.html \
nucleic_primers_group.html \
nucleic_profiles_group.html \
nucleic_properties_group.html \
nucleic_repeats_group.html \
nucleic_restriction_group.html \
nucleic_rna_folding_group.html \
nucleic_transcription_group.html \
nucleic_translation_group.html \
ontology_group.html \
ontology_edam_group.html \
ontology_go_group.html \
ontology_taxonomy_group.html \
phylogeny_group.html \
phylogeny_consensus_group.html \
phylogeny_continuous_characters_group.html \
phylogeny_discrete_characters_group.html \
phylogeny_distance_matrix_group.html \
phylogeny_gene_frequencies_group.html \
phylogeny_molecular_sequence_group.html \
phylogeny_tree_drawing_group.html \
protein_2d_structure_group.html \
protein_3d_structure_group.html \
protein_composition_group.html \
protein_domains_group.html \
protein_functional_sites_group.html \
protein_modifications_group.html \
protein_motifs_group.html \
protein_mutation_group.html \
protein_profiles_group.html \
protein_properties_group.html \
test_group.html \
utils_group.html \
utils_database_creation_group.html \
utils_database_indexing_group.html

eprograms1_DATA = \
aaindexextract.html \
abiview.html \
acdc.html \
acdlog.html \
acdpretty.html \
acdtable.html \
acdtrace.html \
acdvalid.html \
aligncopy.html \
aligncopypair.html \
antigenic.html \
assemblyget.html \
backtranambig.html \
backtranseq.html \
banana.html \
biosed.html \
btwisted.html \
cachedas.html \
cachedbfetch.html \
cacheebeyesearch.html \
cacheensembl.html \
cai.html \
chaos.html \
charge.html \
checktrans.html \
chips.html \
cirdna.html \
codcmp.html \
codcopy.html \
coderet.html \
complex.html \
compseq.html \
cons.html \
consambig.html \
cpgplot.html \
cpgreport.html \
cusp.html \
cutgextract.html \
cutseq.html \
dan.html \
dbiblast.html \
dbifasta.html \
dbiflat.html \
dbigcg.html \
dbtell.html \
dbxcompress.html \
dbxedam.html \
dbxfasta.html \
dbxflat.html \
dbxgcg.html \
dbxobo.html \
dbxreport.html \
dbxresource.html \
dbxstat.html \
dbxtax.html \
dbxuncompress.html \
degapseq.html \
density.html \
descseq.html \
diffseq.html \
distmat.html \
dotmatcher.html \
dotpath.html \
dottup.html \
dreg.html \
drfinddata.html \
drfindformat.html \
drfindid.html \
drfindresource.html \
drget.html \
drtext.html \
edamdef.html \
edamhasinput.html \
edamhasoutput.html \
edamisformat.html \
edamisid.html \
edamname.html \
edialign.html \
einverted.html \
embossdata.html \
embossupdate.html \
embossversion.html \
emma.html \
emowse.html \
entret.html \
epestfind.html \
eprimer3.html \
eprimer32.html \
equicktandem.html \
est2genome.html \
etandem.html \
extractalign.html \
extractfeat.html \
extractseq.html \
featcopy.html \
featmerge.html \
featreport.html \
feattext.html \
findkm.html \
freak.html \
fuzznuc.html \
fuzzpro.html \
fuzztran.html \
garnier.html \
geecee.html \
getorf.html \
godef.html \
goname.html \
helixturnhelix.html \
hmoment.html \
iep.html \
index.html \
infoalign.html \
infoassembly.html \
infobase.html \
inforesidue.html \
infoseq.html \
isochore.html \
jaspextract.html \
jaspscan.html \
jembossctl.html

eprograms2_DATA = \
libscan.html \
lindna.html \
listor.html \
makenucseq.html \
makeprotseq.html \
marscan.html \
maskambignuc.html \
maskambigprot.html \
maskfeat.html \
maskseq.html \
matcher.html \
megamerger.html \
merger.html \
msbar.html \
mwcontam.html \
mwfilter.html \
needle.html \
needleall.html \
newcpgreport.html \
newcpgseek.html \
newseq.html \
nohtml.html \
noreturn.html \
nospace.html \
notab.html \
notseq.html \
nthseq.html \
nthseqset.html \
octanol.html \
oddcomp.html \
ontocount.html \
ontoget.html \
ontogetcommon.html \
ontogetdown.html \
ontogetobsolete.html \
ontogetroot.html \
ontogetsibs.html \
ontogetup.html \
ontoisobsolete.html \
ontotext.html \
palindrome.html \
pasteseq.html \
patmatdb.html \
patmatmotifs.html \
pepcoil.html \
pepdigest.html \
pepinfo.html \
pepnet.html \
pepstats.html \
pepwheel.html \
pepwindow.html \
pepwindowall.html \
plotcon.html \
plotorf.html \
polydot.html \
preg.html \
prettyplot.html \
prettyseq.html \
primersearch.html \
printsextract.html \
profit.html \
prophecy.html \
prophet.html \
prosextract.html \
pscan.html \
psiphi.html \
rebaseextract.html \
recoder.html \
redata.html \
refseqget.html \
remap.html \
restover.html \
restrict.html \
revseq.html \
seealso.html \
seqcount.html \
seqmatchall.html \
seqret.html \
seqretsetall.html \
seqretsplit.html \
seqxref.html \
seqxrefget.html \
servertell.html \
showalign.html \
showdb.html \
showfeat.html \
showorf.html \
showpep.html \
showseq.html \
showserver.html \
shuffleseq.html \
sigcleave.html \
silent.html \
sirna.html \
sixpack.html \
sizeseq.html \
skipredundant.html \
skipseq.html \
splitsource.html \
splitter.html \
stretcher.html \
stssearch.html \
supermatcher.html \
syco.html \
taxget.html \
taxgetdown.html \
taxgetrank.html \
taxgetspecies.html \
taxgetup.html \
tcode.html \
template.html \
textget.html \
textsearch.html \
tfextract.html \
tfm.html \
tfscan.html \
tmap.html \
tranalign.html \
transeq.html \
trimest.html \
trimseq.html \
trimspace.html \
twofeat.html \
union.html \
urlget.html \
variationget.html \
vectorstrip.html \
water.html \
whichdb.html \
wobble.html \
wordcount.html \
wordfinder.html \
wordmatch.html \
wossdata.html \
wossinput.html \
wossname.html \
wossoperation.html \
wossoutput.html \
wossparam.html \
wosstopic.html \
xmlget.html \
xmltext.html \
yank.html

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	@$(NORMAL_UNINSTALL)
	@list='$(egroups_DATA)'; test -n "$(egroupsdir)" || list=; \
	files=`for p in $$list; do echo $$p; done | sed -e 's|^.*/||'`; \
	dir='$(DESTDIR)$(egroupsdir)'; $(am__uninstall_files_from_dir)
install-eimagesDATA: $(eimages_DATA)
	@$(NORMAL_INSTALL)
	@list='$(eimages_DATA)'; test -n "$(eimagesdir)" || list=; \
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	  echo " $(MKDIR_P) '$(DESTDIR)$(eimagesdir)'"; \
	  $(MKDIR_P) "$(DESTDIR)$(eimagesdir)" || exit 1; \
	fi; \
	for p in $$list; do \
	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
	  echo "$$d$$p"; \
	done | $(am__base_list) | \
	while read files; do \
	  echo " $(INSTALL_DATA) $$files '$(DESTDIR)$(eimagesdir)'"; \
	  $(INSTALL_DATA) $$files "$(DESTDIR)$(eimagesdir)" || exit $$?; \
	done

uninstall-eimagesDATA:
	@$(NORMAL_UNINSTALL)
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	files=`for p in $$list; do echo $$p; done | sed -e 's|^.*/||'`; \
	dir='$(DESTDIR)$(eimagesdir)'; $(am__uninstall_files_from_dir)
install-eprograms1DATA: $(eprograms1_DATA)
	@$(NORMAL_INSTALL)
	@list='$(eprograms1_DATA)'; test -n "$(eprograms1dir)" || list=; \
	if test -n "$$list"; then \
	  echo " $(MKDIR_P) '$(DESTDIR)$(eprograms1dir)'"; \
	  $(MKDIR_P) "$(DESTDIR)$(eprograms1dir)" || exit 1; \
	fi; \
	for p in $$list; do \
	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
	  echo "$$d$$p"; \
	done | $(am__base_list) | \
	while read files; do \
	  echo " $(INSTALL_DATA) $$files '$(DESTDIR)$(eprograms1dir)'"; \
	  $(INSTALL_DATA) $$files "$(DESTDIR)$(eprograms1dir)" || exit $$?; \
	done

uninstall-eprograms1DATA:
	@$(NORMAL_UNINSTALL)
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	files=`for p in $$list; do echo $$p; done | sed -e 's|^.*/||'`; \
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install-eprograms2DATA: $(eprograms2_DATA)
	@$(NORMAL_INSTALL)
	@list='$(eprograms2_DATA)'; test -n "$(eprograms2dir)" || list=; \
	if test -n "$$list"; then \
	  echo " $(MKDIR_P) '$(DESTDIR)$(eprograms2dir)'"; \
	  $(MKDIR_P) "$(DESTDIR)$(eprograms2dir)" || exit 1; \
	fi; \
	for p in $$list; do \
	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
	  echo "$$d$$p"; \
	done | $(am__base_list) | \
	while read files; do \
	  echo " $(INSTALL_DATA) $$files '$(DESTDIR)$(eprograms2dir)'"; \
	  $(INSTALL_DATA) $$files "$(DESTDIR)$(eprograms2dir)" || exit $$?; \
	done

uninstall-eprograms2DATA:
	@$(NORMAL_UNINSTALL)
	@list='$(eprograms2_DATA)'; test -n "$(eprograms2dir)" || list=; \
	files=`for p in $$list; do echo $$p; done | sed -e 's|^.*/||'`; \
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tags: TAGS
TAGS:

ctags: CTAGS
CTAGS:

cscope cscopelist:


distdir: $(DISTFILES)
	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
	list='$(DISTFILES)'; \
	  dist_files=`for file in $$list; do echo $$file; done | \
	  sed -e "s|^$$srcdirstrip/||;t" \
	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
	case $$dist_files in \
	  */*) $(MKDIR_P) `echo "$$dist_files" | \
			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
			   sort -u` ;; \
	esac; \
	for file in $$dist_files; do \
	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
	  if test -d $$d/$$file; then \
	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
	    if test -d "$(distdir)/$$file"; then \
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	    fi; \
	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
	      cp -fpR $(srcdir)/$$file "$(distdir)$$dir" || exit 1; \
	      find "$(distdir)/$$file" -type d ! -perm -700 -exec chmod u+rwx {} \;; \
	    fi; \
	    cp -fpR $$d/$$file "$(distdir)$$dir" || exit 1; \
	  else \
	    test -f "$(distdir)/$$file" \
	    || cp -p $$d/$$file "$(distdir)/$$file" \
	    || exit 1; \
	  fi; \
	done
check-am: all-am
check: check-am
all-am: Makefile $(DATA)
installdirs:
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	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
	done
install: install-am
install-exec: install-exec-am
install-data: install-data-am
uninstall: uninstall-am

install-am: all-am
	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am

installcheck: installcheck-am
install-strip:
	if test -z '$(STRIP)'; then \
	  $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
	    install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
	      install; \
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	  $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
	    install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
	    "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'" install; \
	fi
mostlyclean-generic:

clean-generic:

distclean-generic:
	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
	-test . = "$(srcdir)" || test -z "$(CONFIG_CLEAN_VPATH_FILES)" || rm -f $(CONFIG_CLEAN_VPATH_FILES)

maintainer-clean-generic:
	@echo "This command is intended for maintainers to use"
	@echo "it deletes files that may require special tools to rebuild."
clean: clean-am

clean-am: clean-generic clean-libtool mostlyclean-am

distclean: distclean-am
	-rm -f Makefile
distclean-am: clean-am distclean-generic

dvi: dvi-am

dvi-am:

html: html-am

html-am:

info: info-am

info-am:

install-data-am: install-egroupsDATA install-eimagesDATA \
	install-eprograms1DATA install-eprograms2DATA

install-dvi: install-dvi-am

install-dvi-am:

install-exec-am:

install-html: install-html-am

install-html-am:

install-info: install-info-am

install-info-am:

install-man:

install-pdf: install-pdf-am

install-pdf-am:

install-ps: install-ps-am

install-ps-am:

installcheck-am:

maintainer-clean: maintainer-clean-am
	-rm -f Makefile
maintainer-clean-am: distclean-am maintainer-clean-generic

mostlyclean: mostlyclean-am

mostlyclean-am: mostlyclean-generic mostlyclean-libtool

pdf: pdf-am

pdf-am:

ps: ps-am

ps-am:

uninstall-am: uninstall-egroupsDATA uninstall-eimagesDATA \
	uninstall-eprograms1DATA uninstall-eprograms2DATA

.MAKE: install-am install-strip

.PHONY: all all-am check check-am clean clean-generic clean-libtool \
	distclean distclean-generic distclean-libtool distdir dvi \
	dvi-am html html-am info info-am install install-am \
	install-data install-data-am install-dvi install-dvi-am \
	install-egroupsDATA install-eimagesDATA install-eprograms1DATA \
	install-eprograms2DATA install-exec install-exec-am \
	install-html install-html-am install-info install-info-am \
	install-man install-pdf install-pdf-am install-ps \
	install-ps-am install-strip installcheck installcheck-am \
	installdirs maintainer-clean maintainer-clean-generic \
	mostlyclean mostlyclean-generic mostlyclean-libtool pdf pdf-am \
	ps ps-am uninstall uninstall-am uninstall-egroupsDATA \
	uninstall-eimagesDATA uninstall-eprograms1DATA \
	uninstall-eprograms2DATA


# Tell versions [3.59,3.63) of GNU make to not export all variables.
# Otherwise a system limit (for SysV at least) may be exceeded.
.NOEXPORT:
