#!/bin/sh

# Public domain notice for all NCBI EDirect scripts is located at:
# https://www.ncbi.nlm.nih.gov/books/NBK179288/#chapter6.Public_Domain_Notice

# download-sequence BCT PLN

if [ "$#" -lt 1 ]
then
  echo "Must have at least one sequence division abbreviation"
  exit 1
fi

filt="grep"
while [ "$#" -gt 0 ]
do
  filt=$( echo "$filt -e $1" )
  shift
done
filt=$( echo "$filt" | tr '[A-Z]' '[a-z]' )

download() {
  nquire -lst ftp.ncbi.nlm.nih.gov ncbi-asn1 |
  grep "aso.gz" | eval "$filt" | sort -V |
  skip-if-file-exists |
  while read fl
  do
    echo "$fl"
    echo "$fl" |
    nquire -asp ftp.ncbi.nlm.nih.gov ncbi-asn1
  done
}

download
if [ $? -ne 0 ]
then
  download
fi
