#INPUT_BAM=/Users/nemesh/dropseqrna/transcriptome_java/testdata/org/broadinstitute/dropseq/private/barnyard/digitalallelecounts/sampleassignment/multisample/test_contamination_likelihood.bam	INPUT_VCF=/Users/nemesh/dropseqrna/transcriptome_java/testdata/org/broadinstitute/dropseq/private/barnyard/digitalallelecounts/sampleassignment/multisample/TTTGCGCGGAGC:ATTGTTTAGGAG2.vcf	DONOR_FILE=testdata/org/broadinstitute/dropseq/private/barnyard/digitalallelecounts/sampleassignment/multisample/donors.txt	CELL_BC_FILE=testdata/org/broadinstitute/dropseq/private/barnyard/digitalallelecounts/sampleassignment/multisample/test_contamination_likelihood.cellBarcodes.txt	GQ_THRESHOLD=30	FRACTION_SAMPLES_PASSING=0.5	FORCED_RATIO=0.8	USE_MISSING_DATA=false	READ_MQ=10	FIXED_ERROR_RATE=NA	MAX_ERROR_RATE=0.01	LOCUS_FUNCTION=[CODING, UTR]	PAIRS_TO_TEST=5
cell	sampleOneMixtureRatio	sampleOne	sampleOneLikelihood	sampleTwo	sampleTwoLikelihood	mixedSample	mixedSampleLikelihood	num_paired_snps	num_inform_snps	num_umi	num_inform_umis	lr_test_stat	sampleOneWrongAlleleCount	sampleTwoWrongAlleleCount	bestLikelihood	bestSample	doublet_pval	best_pair_pvalue
TTTGCGCGGAGC:ATTGTTTAGGAG	0.515	HUES53	-198.80011077495308	NKX	-208.20841670714287	HUES53:NKX	-121.12187647055174	437	279	616	389	77.67823430440134	75	74	-121.12187647055174	HUES53:NKX	1.0	1.0
fake	0.522	HUES53	-152.81773400759351	NKX	-157.40707736639806	HUES53:NKX	-128.11951473465106	437	279	616	389	24.698219272942453	75	74	-128.11951473465106	HUES53:NKX	1.0	1.0
