BLASTX 2.2.22+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           8,994,603 sequences; 3,078,807,967 total letters



Query=  gi|4104054|gb|AH007193.1|SEG_CVIGS Centaurea vallesiaca 18S
ribosomal RNA gene, partial sequence
Length=1002
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gb|ABR25402.1|  unknown [Oryza sativa (indica cultivar-group)]        54.3    2e-05


>gb|ABR25402.1| unknown [Oryza sativa (indica cultivar-group)]
Length=26

 Score = 54.3 bits (129),  Expect = 2e-05
 Identities = 24/26 (92%), Positives = 25/26 (96%), Gaps = 0/26 (0%)
 Frame = +2

Query  911  HMLVSKIKPCMCKYEQIQTVKLRMAH  988
            HMLVSKIKPCMCKYE I+TVKLRMAH
Sbjct  1    HMLVSKIKPCMCKYELIRTVKLRMAH  26



Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 367397307882


Query=  gi|4218935|gb|AF074388.1|AF074388 Sambucus nigra hevein-like
protein HLPf gene, partial cds
Length=2050
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gb|AAD12237.1|  hevein-like protein HLPf [Sambucus nigra]              410    3e-112
gb|AAD11408.1|  hevein-like protein [Sambucus nigra]                   406    5e-111
gb|AAD11406.1|  hevein-like protein [Sambucus nigra]                   406    5e-111
gb|AAD11407.1|  hevein-like protein [Sambucus nigra]                   395    7e-108
gb|AAL30421.1|AF434174_1  hevein-like protein [Sambucus nigra]         384    2e-104
gb|AAL30422.1|AF434175_1  hevein-like protein [Sambucus nigra]         279    9e-73 
gb|AAO17294.1|  chitinase [Ficus carica]                               189    7e-46 
gb|ACM45713.1|  class I chitinase [Pyrus pyrifolia]                    185    2e-44 
dbj|BAB40817.2|  endochitinase MCHT-2 [Cucumis melo]                   181    2e-43 
gb|ABB86300.1|  chitinase [Ficus awkeotsang]                           181    3e-43 


>gb|AAD12237.1| hevein-like protein HLPf [Sambucus nigra]
Length=333

 Score =  410 bits (1053),  Expect = 3e-112
 Identities = 199/238 (83%), Positives = 200/238 (84%), Gaps = 33/238 (13%)
 Frame = +1

Query  1    MKLSTLLILSFPFLLGTIVFADDADNGPWQCGRDAGGALCHDNLCCSFWGFCGSTYQYCE  180
            MKLSTLLILSFPFLLGTIVFADDADNGPWQCGRDAGGALCHDNLCCSFWGFCGSTYQYCE
Sbjct  1    MKLSTLLILSFPFLLGTIVFADDADNGPWQCGRDAGGALCHDNLCCSFWGFCGSTYQYCE  60

Query  181  DGCQSQCRDTSRLTDLPRALLRPTNNRNAISKMISKSLFNEMFKHMKDCPSRGFYSYEAF  360
            DGCQSQCRDTSRLTDLPRALLRPTNNRNAISKMISKSLFNEMFKHMKDCPSRGFYSYEAF
Sbjct  61   DGCQSQCRDTSRLTDLPRALLRPTNNRNAISKMISKSLFNEMFKHMKDCPSRGFYSYEAF  120

Query  361  ITAARSFPGFCTSGDVATRKREPAAFLsqtsqattg*ssNLNIYLC*EIISTIYICFEIN  540
            ITAARSFPGFCTSGDVATRKREPAAFLS                                
Sbjct  121  ITAARSFPGFCTSGDVATRKREPAAFLS--------------------------------  148

Query  541  LRTWMLGVGGRLDSAVVDPHAWGYCYVNGTTDEQYCTSSNWPCASGKQYNRRGPIQLT  714
             +T     GGRLDSAVVDPHAWGYCYVNGTTDEQYCTSSNWPCASGKQYNRRGPIQLT
Sbjct  149  -QTSQATTGGRLDSAVVDPHAWGYCYVNGTTDEQYCTSSNWPCASGKQYNRRGPIQLT  205



Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 967993058520


Query=  gi|5690369|gb|AF158246.1|AF158246 Cricetulus griseus glucose
phosphate isomerase (GPI) gene, partial intron sequence
Length=550


***** No hits found *****



Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 108443629616


Query=  gi|5049839|gb|AI730987.1|AI730987 BNLGHi8354 Six-day Cotton fiber
Gossypium hirsutum cDNA 5' similar to TUBULIN BETA-1 CHAIN
gi|486734|pir|S35142 tubulin beta chain - white lupine gi|402636
(X70184) Beta tubulin 1 [Lupinus albus], mRNA sequence
Length=655
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gb|ABY86655.1|  beta-tubulin 4 [Gossypium hirsutum]                    408    2e-112
gb|EEF51386.1|  tubulin beta chain, putative [Ricinus communis]        406    7e-112
ref|NP_568437.1|  TUB8 (tubulin beta-8) [Arabidopsis thaliana] >s...   405    2e-111
ref|XP_002271992.1|  PREDICTED: hypothetical protein [Vitis vinif...   402    1e-110
gb|AAK96884.1|  beta tubulin [Arabidopsis thaliana] >gb|AAM10035....   402    1e-110
ref|XP_002267380.1|  PREDICTED: hypothetical protein [Vitis vinif...   402    1e-110
sp|P37392.1|TBB1_LUPAL  RecName: Full=Tubulin beta-1 chain; AltNa...   402    1e-110
ref|XP_002313404.1|  tubulin, beta chain [Populus trichocarpa] >g...   401    2e-110
gb|EEF51167.1|  tubulin beta chain, putative [Ricinus communis]        400    4e-110
ref|XP_002299541.1|  tubulin, beta chain [Populus trichocarpa] >g...   400    4e-110


>gb|ABY86655.1| beta-tubulin 4 [Gossypium hirsutum]
Length=448

 Score =  408 bits (1048),  Expect = 2e-112
 Identities = 196/201 (97%), Positives = 197/201 (98%), Gaps = 0/201 (0%)
 Frame = +2

Query  50   MREILHIQAGQCGNQIGANFWEVVCAEHGINSTGRYQGDNDLQLERVNVYYNEASCGRFV  229
            MREILHIQAGQCGNQIGA FWEVVCAEHGI+STGRYQGDNDLQLERVNVYYNEASCGRFV
Sbjct  1    MREILHIQAGQCGNQIGAKFWEVVCAEHGIDSTGRYQGDNDLQLERVNVYYNEASCGRFV  60

Query  230  PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSXLDVV  409
            PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDS LDVV
Sbjct  61   PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV  120

Query  410  RKEAENCDCLQGFQVCHSLGRGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV  589
            RKEAENCDCLQGFQVCHSLG GTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV
Sbjct  121  RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV  180

Query  590  EPYNATLSVHXLVENADECMV  652
            EPYNATLSVH LVENADECMV
Sbjct  181  EPYNATLSVHQLVENADECMV  201



Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 165344802738


Query=  gi|5052071|gb|AF067555.1|AF067555 Phlox stansburyi internal
transcribed spacer 1, 5.8S ribosomal RNA gene, and internal
transcribed spacer 2, complete sequence
Length=623
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

dbj|BAE98425.1|  hypothetical protein [Arabidopsis thaliana]          93.6    6e-19
gb|EEH50844.1|  predicted protein [Micromonas pusilla CCMP1545]       96.3    2e-18
ref|XP_001786502.1|  predicted protein [Physcomitrella patens sub...  75.1    4e-12
ref|XP_001786120.1|  predicted protein [Physcomitrella patens sub...  73.2    2e-11
ref|XP_001786259.1|  predicted protein [Physcomitrella patens sub...  73.2    2e-11
ref|XP_001786759.1|  predicted protein [Physcomitrella patens sub...  73.2    2e-11
ref|XP_001786133.1|  predicted protein [Physcomitrella patens sub...  70.9    8e-11
sp|Q8TGM5|ART3_YEAST  Uncharacterized protein ART3 (Antisense to ...  58.9    3e-07
ref|XP_001786634.1|  predicted protein [Physcomitrella patens sub...  57.4    9e-07
ref|XP_453851.1|  unnamed protein product [Kluyveromyces lactis]      56.2    2e-06


>dbj|BAE98425.1| hypothetical protein [Arabidopsis thaliana]
Length=80

 Score = 93.6 bits (231),  Expect(2) = 6e-19
 Identities = 42/48 (87%), Positives = 45/48 (93%), Gaps = 1/48 (2%)
 Frame = +1

Query  283  MKNVAKCDTWCELQNPVNHRVFERKLRPKPLGRGHVCLGVSHRVAPNP  426
            MKNVAKCDTWCELQNPVNHRVFERKLRPKP GRGHVCLGV++R  P+P
Sbjct  1    MKNVAKCDTWCELQNPVNHRVFERKLRPKPSGRGHVCLGVTNR-RPSP  47



Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 147032237429


Query=  gi|3176602|gb|U78617.1|LOU78617 Lathyrus odoratus phytochrome A
(PHYA) gene, partial cds
Length=309
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gb|AAC18749.1|  phytochrome A [Lathyrus odoratus]                      213    4e-54
sp|P15001.1|PHYA_PEA  RecName: Full=Phytochrome A >gb|AAA33682.1|...   208    1e-52
sp|P93673.1|PHYA_LATSA  RecName: Full=Phytochrome type A >gb|AAB4...   208    1e-52
gb|AAC18745.1|  phytochrome A [Lennea melanocarpa] >gb|AAC18746.1...   207    2e-52
gb|AAC18675.1|  phytochrome A [Sophora affinis]                        207    2e-52
gb|AAC18670.1|  phytochrome A [Myrospermum sousanum]                   206    5e-52
gb|AAC18750.1|  phytochrome A [Hybosema robustum]                      206    6e-52
gb|AAC18668.1|  phytochrome A [Cyclolobium nutans]                     206    8e-52
gb|AAC18709.1|  phytochrome A [Millettia richardiana]                  205    1e-51
gb|AAC18693.1|  phytochrome A [Callerya atropurpurea]                  204    2e-51


>gb|AAC18749.1| phytochrome A [Lathyrus odoratus]
Length=103

 Score =  213 bits (543),  Expect = 4e-54
 Identities = 103/103 (100%), Positives = 103/103 (100%), Gaps = 0/103 (0%)
 Frame = +1

Query  1    QAARFLFMKNKVRMIVDCHAKHVKVLQDEKLPFDLTLCGSTLRAPHSCHLQYMANMDSIA  180
            QAARFLFMKNKVRMIVDCHAKHVKVLQDEKLPFDLTLCGSTLRAPHSCHLQYMANMDSIA
Sbjct  1    QAARFLFMKNKVRMIVDCHAKHVKVLQDEKLPFDLTLCGSTLRAPHSCHLQYMANMDSIA  60

Query  181  SLVMAVVVNDSDEDGDSRDAVLPQKKKRLWGLVVCHNTTPRFV  309
            SLVMAVVVNDSDEDGDSRDAVLPQKKKRLWGLVVCHNTTPRFV
Sbjct  61   SLVMAVVVNDSDEDGDSRDAVLPQKKKRLWGLVVCHNTTPRFV  103



Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 75367093081


Query=  gi|5817701|gb|AF142731.1|AF142731 Wisteria frutescens maturase-like
protein (matK) gene, complete cds; chloroplast gene for chloroplast
product
Length=2551
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

sp|Q9TKP6.1|MATK_WISFR  RecName: Full=Maturase K; AltName: Full=I...   948    0.0  
gb|ACB58148.1|  maturase K [Wisteria frutescens]                       946    0.0  
gb|ACB58149.1|  maturase K [Wisteria frutescens] >gb|ACB58150.1| ...   945    0.0  
gb|ACB58142.1|  maturase K [Callerya megasperma]                       944    0.0  
gb|AAD52903.1|AF142732_1  maturase-like protein [Wisteria sinensi...   936    0.0  
gb|ACB58143.1|  maturase K [Wisteria brachybotrys]                     928    0.0  
gb|AAD52904.1|AF142733_1  maturase-like protein [Callerya reticul...   925    0.0  
gb|AAD52905.1|AF142734_1  maturase-like protein [Callerya atropur...   890    0.0  
gb|ABS20107.1|  maturase-like protein [Astragalus uliginosus]          887    0.0  
dbj|BAF57483.1|  maturase [Glycyrrhiza uralensis] >dbj|BAF57484.1...   887    0.0  


>sp|Q9TKP6.1|MATK_WISFR RecName: Full=Maturase K; AltName: Full=Intron maturase
 gb|AAD52902.1|AF142731_1 maturase-like protein [Wisteria frutescens]
Length=506

 Score =  948 bits (2451),  Expect = 0.0
 Identities = 506/506 (100%), Positives = 506/506 (100%), Gaps = 0/506 (0%)
 Frame = +1

Query  727   MKEYQVYLERDRSRQQDFLYPLIFREYIYGLAYSHDFNRSIFVENVGYDNKSSLLIVKRL  906
             MKEYQVYLERDRSRQQDFLYPLIFREYIYGLAYSHDFNRSIFVENVGYDNKSSLLIVKRL
Sbjct  1     MKEYQVYLERDRSRQQDFLYPLIFREYIYGLAYSHDFNRSIFVENVGYDNKSSLLIVKRL  60

Query  907   ITRMYQQNHLIISANDSNKNPFLGYNKNFYSQIISDGFAVVVEIPFFLQLSSSLEEAEIV  1086
             ITRMYQQNHLIISANDSNKNPFLGYNKNFYSQIISDGFAVVVEIPFFLQLSSSLEEAEIV
Sbjct  61    ITRMYQQNHLIISANDSNKNPFLGYNKNFYSQIISDGFAVVVEIPFFLQLSSSLEEAEIV  120

Query  1087  KSYHNLRSIHSIFPFLEDKFTYLNYVSDIRIPYPIHLEILVQILRYWVKDASffhllrff  1266
             KSYHNLRSIHSIFPFLEDKFTYLNYVSDIRIPYPIHLEILVQILRYWVKDASFFHLLRFF
Sbjct  121   KSYHNLRSIHSIFPFLEDKFTYLNYVSDIRIPYPIHLEILVQILRYWVKDASFFHLLRFF  180

Query  1267  lyhfSNRNSLITPKKSISTFSKSNPRLFLFLYNFYVCEYESIFRFLRNQSSHLRLKSFSV  1446
             LYHFSNRNSLITPKKSISTFSKSNPRLFLFLYNFYVCEYESIFRFLRNQSSHLRLKSFSV
Sbjct  181   LYHFSNRNSLITPKKSISTFSKSNPRLFLFLYNFYVCEYESIFRFLRNQSSHLRLKSFSV  240

Query  1447  FFERIFFYAKREHLVKVFPKDFSSTLTFFKDPFIHYVRYQGKSILASKNAPLLMNKWKHY  1626
             FFERIFFYAKREHLVKVFPKDFSSTLTFFKDPFIHYVRYQGKSILASKNAPLLMNKWKHY
Sbjct  241   FFERIFFYAKREHLVKVFPKDFSSTLTFFKDPFIHYVRYQGKSILASKNAPLLMNKWKHY  300

Query  1627  FIHLWQCFFDVWSQPGTIHINQLSEHSFHFLGYFSNVRLNRSVVRSQMLQNTFLIEIVIK  1806
             FIHLWQCFFDVWSQPGTIHINQLSEHSFHFLGYFSNVRLNRSVVRSQMLQNTFLIEIVIK
Sbjct  301   FIHLWQCFFDVWSQPGTIHINQLSEHSFHFLGYFSNVRLNRSVVRSQMLQNTFLIEIVIK  360

Query  1807  KLDIIVPIIPLIRSLAKAKFCNVLGHPLSKSVWADSSDFDIIDRFLRICRNLSHYYNGSS  1986
             KLDIIVPIIPLIRSLAKAKFCNVLGHPLSKSVWADSSDFDIIDRFLRICRNLSHYYNGSS
Sbjct  361   KLDIIVPIIPLIRSLAKAKFCNVLGHPLSKSVWADSSDFDIIDRFLRICRNLSHYYNGSS  420

Query  1987  KKKNLYRIKYILRLSCIKTLACKHKSTVRAFLKKSGseelleeffteeeeilslifPRTS  2166
             KKKNLYRIKYILRLSCIKTLACKHKSTVRAFLKKSGSEELLEEFFTEEEEILSLIFPRTS
Sbjct  421   KKKNLYRIKYILRLSCIKTLACKHKSTVRAFLKKSGSEELLEEFFTEEEEILSLIFPRTS  480

Query  2167  STLQRLHRNRIWYLDILFSNDLVNHE  2244
             STLQRLHRNRIWYLDILFSNDLVNHE
Sbjct  481   STLQRLHRNRIWYLDILFSNDLVNHE  506



Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 1251086325060


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Jun 4, 2009  5:41 PM
  Number of letters in database: 3,078,807,967
  Number of sequences in database:  8,994,603



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 12
Window for multiple hits: 40
